Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------MGVKKEKGRKRFRKRK-TF-GNQILP----LELLIEKN--KREI-INSAELME-EIYMKIDEKHTQCVTK
3G1J Chain:A ((0-89))
GVDRDYLQSEYGVLKAGQCYKVVRSFRDYRNINYERGDVMRFLGSNFVPYESGLSLFFDKNGSERQIMLCVRPEFQMEIAHHLDSYFCKL---
General information:
TITO was launched using:
RESULT:
Template:
3G1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 22036 for 230 contacts (95.8/contact) +
2D Compatibility (PS) -4789 + (NN) 6553 + (LL) 216
1D Compatibility (HY) 1600 + (ID) 50
Total energy: 25566.0 ( 111.16 by residue)
QMean score : 0.094
(partial model without unconserved sides chains):
PDB file :
Tito_3G1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G1J-query.scw
PDB file :
Tito_Scwrl_3G1J.pdb
: