Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG
2LNY Chain:A ((1-20))
----------------MAAVAGLYGLGEDRQHRKKQ-
General information:
TITO was launched using:
RESULT:
Template:
2LNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2067 for 66 contacts (31.3/contact) +
2D Compatibility (PS) -2103 + (NN) -1197 + (LL) 1080
1D Compatibility (HY) -800 + (ID) 200
Total energy: -1153.0 ( -17.47 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_2LNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LNY-query.scw
PDB file :
Tito_Scwrl_2LNY.pdb
: