Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDK-LKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK
1XMQ Chain:M ((2-122))
-ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKK
General information:
TITO was launched using:
RESULT:
Template:
1XMQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37016 for 724 contacts (-51.1/contact) +
2D Compatibility (PS) -12726 + (NN) -3811 + (LL) 208
1D Compatibility (HY) -11200 + (ID) 3700
Total energy: -68245.0 ( -94.26 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1XMQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XMQ-query.scw
PDB file :
Tito_Scwrl_1XMQ.pdb
: