Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTRADFIQFGAMIHGVGGTTDGWRHPDVDPSASTNIEFYMKKAQTAEKGLFSFIFIADGLFISEKSIPHFLNRFEPITILSALASVTKNIGLVGTFSTSFTEPFTISRQLMSLDHISGGRAGWNLVTSPQEGAARNHSKSNLPEHTERYEIAQEHLDVVRGLWNSWEHDAFIHNKKTGQFFDQAKLHRLNHKGKYFQVEGP-LNIGRSKQGEPVVFQAGSSETGRQFAAKNADAIFTHSNSLEETKAFYADVKSRAADEGRDPSSVRIFPGISPIVADTEEEAEKKYREFAELIPIENAVTYLARFFDDYDLSVYPLDEPFPDIGDVGKNAFQSTTDRIKREAKARNLTLREVAQEMAFPRTLFIGTPERVASLIETWFNAEAADGFIVGSDIPGTLDAFVEKVIPILQERGLYRQDYRGGTLRENLGLGIPQHQSVLHSSHH
1M41 Chain:A ((1-361))--SLNMFWFLPT------HGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGR-----------SCEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVF--LDHSERYEASAEFTQVWRRLLQR---------------------ETVDFNGKHIHVRGAKLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRK---IRFGIRLHVIVRETNDEAWQAAERLISHLLEISPNLW------------------------------------------------AGVGLVRGGAGTALVGDGPTVAARINEYAALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIP----------------EIPQPQPL------


General information:
TITO was launched using:
RESULT:

Template: 1M41.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1803 -107615 -59.69 -329.10
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -59.69
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.524

(partial model without unconserved sides chains):
PDB file : Tito_1M41.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1M41-query.scw
PDB file : Tito_Scwrl_1M41.pdb: