Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
4DUY Chain:R ((19-85))
-----------KAKVKATLGEFDLR-----DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKL-
General information:
TITO was launched using:
RESULT:
Template:
4DUY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4772 for 408 contacts (-11.7/contact) +
2D Compatibility (PS) -7046 + (NN) -2025 + (LL) 1044
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -17299.0 ( -42.40 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_4DUY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DUY-query.scw
PDB file :
Tito_Scwrl_4DUY.pdb
: