Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVVTAVGRRRGFAMPWVSTARSGAVMLANYSAGVCGRVSSPGLNVRKMCLKANTPGAVTWLDTPKRFLSTQTASRCMAVNSSDVVTGR-IDPQVLHTPLNTDVDGYAHAMHSSINSGPLEYLPATFSVFPALGDVGDLGGGVGAATYALDRLSNMRSGACVGGGESPWRSLMT
1RVV Chain:? ((1-154))
MNIIQGNLVGTGLKIGIVVG-RFNDFITSKLLSGAEDALLRHGVDTND-IDVAWVPGAFEIPFAAKKMAETKKYD--AIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGN--KGVDCAVSAIEMANLNRSFE--------------
General information:
TITO was launched using:
RESULT:
Template:
1RVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55093 for 1277 contacts (-43.1/contact) +
2D Compatibility (PS) -15750 + (NN) 1156 + (LL) 844
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: -72043.0 ( -56.42 by residue)
QMean score : 0.085
(partial model without unconserved sides chains):
PDB file :
Tito_1RVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RVV-query.scw
PDB file :
Tito_Scwrl_1RVV.pdb
: