Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTLAGG-PFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
3C3P Chain:A ((10-210))
-----------IGAYLDGLLPEADPVVAAMEQIARERNIP--IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG---DPLGIAAGQRDIDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRG------------ALREFNHHLSRRRDF-FTTIVPVGNGVLLGYRLS---
General information:
TITO was launched using:
RESULT:
Template:
3C3P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105751 for 1559 contacts (-67.8/contact) +
2D Compatibility (PS) -20752 + (NN) -9620 + (LL) 1388
1D Compatibility (HY) -11600 + (ID) 2950
Total energy: -149285.0 ( -95.76 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_3C3P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C3P-query.scw
PDB file :
Tito_Scwrl_3C3P.pdb
: