Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKTVLILGAGVGGLTTADTLRQLLPPEDRIILVDRSFDGTLGLSLLWVLRGWRRPDDVR--VRPTAASLPGVEMVTATVAHIDIAAQ-VVHTDNSVIGYDALVIALGAALNTDAVPGLSDALDADVAGQFYTLDGAAELRAKVEAL--EHGRIAV-AIAGVPFKCPAAPFEAAFLIAAQLGDRYATGTVQIDTF-TPDPLPMPVAGPEVGEA---LVSMLKDHGVGFHPRKALARVDEAARTMHFGDGTSE-------PFDLLAVVPPH--VPSAAARSAGLSESGWIPVDPRTLSTSADNVWAIGDAT----VLTLPNGKPLPKAAVFAEAQAAVVAHGVARHLGYDVAERHF-TGTGACYVETGDHQAAKGDGDFFAPSAPSVTLYPPSREFHEEKVAQELAWLTRWKT |
| 3SX6 Chain:A ((4-406)) | -SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR-HYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPG-SDPHEGPVQ-SICTVDHAERAFAEYQALLREPGPIVIGAMAGA--SCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQTMGTWNAVAFADMGDRGAAFIALPQLKPRKVDVFAY--GRWVHLAKVAFEKYFIRKMK- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3SX6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -212347 for 3316 contacts (-64.0/contact) +
2D Compatibility (PS) -41650 + (NN) -23109 + (LL) -164
1D Compatibility (HY) -16400 + (ID) 5350
Total energy: -299020.0 ( -90.17 by residue)
QMean score : 0.431
|
|
|