Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHHSFAYRSYSWYVDVDNLPQLPWWLRPFARFHADDHFADPFSCPPHSSLRDRL---DAFFAARGLAVPDGRITALLQARVLGYVFNPLSIFWCHDRDGQLRHVIAEVHNTYGGRHAYLLPPADLPVVTAKNFYVSPFHQLAGYYLIRAPRPDRELDVTVTLHRDRRQVCPEFTATLRGQRRPATTRQIAMMQIISPLAPMVVAARIRIQGIRLWLRRVPVVPR
1V7L Chain:A ((1-162))
MITTGKVWKFGDDISTDEIT-----PGRYNLTKDPKELAKIAFIEVRPDFARNVRPGDVVVAGKNFGIGSSRESAALALKALG-----------------IAGVIAE---SFGRIFYRNAINIGIPLLLGK-----------------TEGLKDGDLVTVNWETG--------EVRKGDEILMFEPLEDFLLEIVR------------EGGILEYIRRRGDLCI
General information:
TITO was launched using:
RESULT:
Template:
1V7L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105490 for 1294 contacts (-81.5/contact) +
2D Compatibility (PS) -16919 + (NN) -7107 + (LL) 4720
1D Compatibility (HY) -5600 + (ID) 1250
Total energy: -131646.0 ( -101.74 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_1V7L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V7L-query.scw
PDB file :
Tito_Scwrl_1V7L.pdb
: