Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTAAGLSGIDLTDLDNFADGF-PHHLFAIHRREAPVYWHRPTEHTPDGEGFWSVATYAETLEVLRDPVTYSSVTGGQRRFGGTVLQDLPVAGQVLNMMDDPRHTRIRRLVSSGLTPRMIRRVEDDLRRRARGLLDGVEPGAPFDFVVEIAAELPMQMICILLGVP----ETDRHWLFEAVEPGFDFRGSRRATMPRLNVED-AGSRLYTYALELIAGKRAEPADDMLSVVANATIDDPDAPALSDAELYLFFHLLFSAGAETTRNSIAGGLLALAENPDQLQTLRSDFELLPTAIEEIVRWTSPSPSKRRTASRAVSLGGQPIEAGQKVVVWEGSANRDPSVFDRADEFDITRKPNPHLGFGQGVHYCLGANLARLELRVLFEELLSRFGSVRVVEPAEWTRSNRHTGIRHLVVELRGG |
4RM4 Chain:A ((22-376)) | -------------------DAYHPFPWYESMRKDAPVSFDEENQ-------VWSVFLYDDVKKVVGDKELFSSCM----------------GNSIINM-DPPKHTKIRSVVNKAFTPRVMKQWEPRIQEITDELIQKFQGRSEFDLVHDFSYPLPVIVISELLGVPSAHMEQFKAWSDLLVSTPKD--KSEEAEKAFLEERDKCEEELAAFFAGIIEEKRNKPEQDIISILVE-------GEKLSGEELIPFCTLLLVAGNETTTNLISNAMYSILETPGVYEELRSHPELMPQAVEEALRFRAPAPVLRRIAKRDTEIGGHLIKEGDMVLAFVASANRDEAKFDRPHMFDIRRHPNPHIAFGHGIHFCLGAPLARLEANIALTSLISAFPHMECV------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158776 for 2664 contacts (-59.6/contact) +
2D Compatibility (PS) -37563 + (NN) -30561 + (LL) 2928
1D Compatibility (HY) -28000 + (ID) 6200
Total energy: -258172.0 ( -96.91 by residue)
QMean score : 0.529
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