Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRR--SVGQGAAMLKGEK---RSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
1L1Z Chain:A ((134-273))
---------LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTV----------GTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
1L1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67850 for 923 contacts (-73.5/contact) +
2D Compatibility (PS) -13164 + (NN) -5934 + (LL) 2052
1D Compatibility (HY) -6400 + (ID) 2300
Total energy: -93596.0 ( -101.40 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1L1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L1Z-query.scw
PDB file :
Tito_Scwrl_1L1Z.pdb
: