Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH
2VKL Chain:A ((13-89))
---------------------------EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLG-
General information:
TITO was launched using:
RESULT:
Template:
2VKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1198 for 387 contacts (-3.1/contact) +
2D Compatibility (PS) -8805 + (NN) -5707 + (LL) 1760
1D Compatibility (HY) -10000 + (ID) 3850
Total energy: -27800.0 ( -71.83 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_2VKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VKL-query.scw
PDB file :
Tito_Scwrl_2VKL.pdb
: