Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTAPAICNTTETVHGIATSLGAVARQASLPRIVGTVVGITVLVVVALLVPVPTAVELRDWAKSLGAWFPLAFLLVHTVVTVPPFPRTAFTLAAGLLFGSVVGVFIAVVGSTASAVIAMLLVRATGWQLNSLVRRRAINRLDERLRERGWLAILSLRLIPVVPFAAINYAAGASGVRILSFAWATLAGLLPGTAAVVILGDAFAGSGSPLLILVSVCTGALGLTGLVYEIRNYRRQHRRMPGYDDPVREPALI |
2DOH Chain:C ((4-28)) | ----------------------------------------------------------------------------------------------------------------------------------LTADAELQRLKNERHEEAELERLS-------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DOH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 425 for 86 contacts (4.9/contact) +
2D Compatibility (PS) -2688 + (NN) -624 + (LL) 18280
1D Compatibility (HY) -400 + (ID) 350
Total energy: 14643.0 ( 170.27 by residue)
QMean score : 0.333
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