Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDGTVTGDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
3R5Y Chain:B ((7-146))
---TGEYVPSPSEWIGNQVAQYEASDGAEAGEFDGRPLVILTTVGRKTGALRKTPVMRVEHDGRYAVVASQGGAPTHPAWYFNLVADPRAQLRDKDAVLSVVARELAGPERAEWWERAVRAYPTYQEYQDNTRRLIPVLLLEP-----
General information:
TITO was launched using:
RESULT:
Template:
3R5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43450 for 1030 contacts (-42.2/contact) +
2D Compatibility (PS) -15716 + (NN) -8945 + (LL) 336
1D Compatibility (HY) -10000 + (ID) 3700
Total energy: -81475.0 ( -79.10 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3R5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5Y-query.scw
PDB file :
Tito_Scwrl_3R5Y.pdb
: