Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTR--FGDFKPREHNLLAIPITETVFECHAGGHIYDRGVD--G--SVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP
2LCG Chain:A ((2-136))
-------NITVETTVAAPVGKVWRAYTTPEDIKQWNAA-SDDWH--TTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVENKRIEYAFGD-------------RTAKVEFLEAP-QGVTVRVSFVAETEY------PVEQQ--QQGWQAILNNFKRHVESHLE-
General information:
TITO was launched using:
RESULT:
Template:
2LCG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62846 for 893 contacts (-70.4/contact) +
2D Compatibility (PS) -13662 + (NN) -2425 + (LL) 484
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -81349.0 ( -91.10 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_2LCG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LCG-query.scw
PDB file :
Tito_Scwrl_2LCG.pdb
: