Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMVNTTTRLSDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDG---------ARWLSLEGRAAVNSDI-DAVRDAELRYAQRYRTPR----PNPRRVVIEVQIERVLGSADLLDRA
1VL7 Chain:A ((23-156))
-------------YAGFIQEFQSAIISTISEQGIPNGSYAPFVIDDA-KNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATLIERESQKWNQVVDQFQERFGQIIEVLRGLADFRIFQLTPKEGRFVIGFG---
General information:
TITO was launched using:
RESULT:
Template:
1VL7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41385 for 839 contacts (-49.3/contact) +
2D Compatibility (PS) -13688 + (NN) -8445 + (LL) 1144
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -65624.0 ( -78.22 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1VL7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL7-query.scw
PDB file :
Tito_Scwrl_1VL7.pdb
: