Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLNTAIATRVNGTPPPEVPIADIELGSLDFWALDDDVRDGAFATLRREAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHPDIFSSYPNITINDQTPELAEYFGSMIVLDDPRHQRLRSIVSRAFTPKVVARIEAAVRDRAHRLVSSMIANNPDRQADLVSELAGPLPLQIICDMMGIPKADHQRIFHWTNVILGFGDPDLATDFDEFMQ----VSADIGAYATALAEDRRVNHHDDLTSSLVEAEVDGERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSDFDGLAPTAVEEIVRWASPVVYMRRTLTQDIELRGTKMAAGDKVSLWYCSANRDESKFADPWTFDLARNPNPHLGFGGGGAHFCLGANLARREIRVAFDELRRQMPDVVATEEPARLLSQFIHGIKTLPVTWS |
4RM4 Chain:A ((30-394)) | ------------------------------------------YESMRKDAPVSF---------DEENQVWSVFLYDDVKKVVGDKELFSS----CM-------G---NSIINMDPPKHTKIRSVVNKAFTPRVMKQWEPRIQEITDELIQKFQGRS---EFDLVHDFSYPLPVIVISELLGVPSAHMEQFKAWSDLLVSTPKDKSEEAEKAFLEERDKCEEELAAFFAGIIEEKRNKPEQDIISILVE----GEKLSGEELIPFCTLLLVAGNETTTNLISNAMYSILETPGVYEELRSHPE-LMPQAVEEALRFRAPAPVLRRIAKRDTEIGGHLIKEGDMVLAFVASANRDEAKFDRPHMFDIRRHPNPHIAF-GHGIHFCLGAPLARLEANIALTSLISAFPHMECV-SITPIENSVIYGLKSFRV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189473 for 2834 contacts (-66.9/contact) +
2D Compatibility (PS) -37245 + (NN) -13925 + (LL) 2900
1D Compatibility (HY) -26800 + (ID) 6000
Total energy: -270543.0 ( -95.46 by residue)
QMean score : 0.469
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