Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPGRFRNFGSQNLGSGNIGSTNVGSGNIGSTNVGSGNIGDTNFG-------NGNNGNFNFGSGNTGSNNIGFGNTGSGNFGFGNTGNNNIGIGLTGDGQIGIGGLNSGSGNIGFGNSGTGNVGLFNSGTGNVG---FGNSGTANTGF-GNAGNVNTGFWNGGSTNTGLANAGAGNTGFFDAGNYNFGSLNAGNINSSFGNSGDGNSGFLNAGDVNSGVGNAGDVNTGLGNSGNINTGGFNPGTLNTGFFSAMTQAGPNSGFFNAGTGNSGFGHNDPAG-SGNSGIQNSG----FGNSGYVNTSTTSMFGGNSGV--LNTGYGNSGFYNAAVNNTGIFVTGV--------MSSGFFNFGTGNSGLLVSGNGLSGFFKNLFG----------- |
| 4FDW Chain:A ((21-401)) | --ASLEDFSIEQLPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILPNSVKSIPKDAFRNSQIAKVVL-NEGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIG--SQAFLKTSQLKT-IEIPENVSTI--GQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNAN-GWRDFTNKITTF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 35160 for 2643 contacts (13.3/contact) +
2D Compatibility (PS) -39238 + (NN) -37007 + (LL) -32
1D Compatibility (HY) -12000 + (ID) 2800
Total energy: -55917.0 ( -21.16 by residue)
QMean score : 0.196
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