Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTARDIMNAGVTCVGEHETLTAAAQYMRE-----HDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIARHLPEHAIVQFVKAICSPMALAS
2YVY Chain:A ((140-251))
------LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------DPRTRVA-EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDV------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73237 for 769 contacts (-95.2/contact) +
2D Compatibility (PS) -11751 + (NN) -5378 + (LL) 3004
1D Compatibility (HY) -12400 + (ID) 1600
Total energy: -101362.0 ( -131.81 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_2YVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YVY-query.scw
PDB file :
Tito_Scwrl_2YVY.pdb
: