Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVLHRQR
4YMY Chain:A ((22-174))
--PPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPALAESGYFRPRPDGSIEVVIACSTGLVEVQKGTYNVDEQSIKLK--S---DLVGNA---SKVKEISREFELVDGKLSYVVRLSTTTNPLQPALKAILDKL-
General information:
TITO was launched using:
RESULT:
Template:
4YMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60756 for 1127 contacts (-53.9/contact) +
2D Compatibility (PS) -16449 + (NN) -8852 + (LL) 732
1D Compatibility (HY) -12000 + (ID) 2900
Total energy: -100225.0 ( -88.93 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_4YMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMY-query.scw
PDB file :
Tito_Scwrl_4YMY.pdb
: