Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSSEPAHGATPKRSPSEGSADNAALCDALAVEHATIYGYGIVSALSPPG----VNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQ----L--PMQVSSAADAARLAVRMENDGATAWRAVVEHA--ETADDRVFASTALTESAVMATRWNRVLGAWPITAAFPGGDE
2YJK Chain:A ((16-151))
----------------EVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKD----------------------
General information:
TITO was launched using:
RESULT:
Template:
2YJK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42291 for 928 contacts (-45.6/contact) +
2D Compatibility (PS) -13368 + (NN) -7953 + (LL) 1284
1D Compatibility (HY) 2000 + (ID) 600
Total energy: -60928.0 ( -65.66 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2YJK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJK-query.scw
PDB file :
Tito_Scwrl_2YJK.pdb
: