Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVVGDVDVEAGGAAADELSGL----FVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAGKG-SIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQ--GIRVNALCPGPVNTPLLQELFAKNPERAARRMVHVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
4RF2 Chain:A ((23-271))
-----DRLKGKVAIVTGGTLGIGLAIADKFVEEGAKVVITGRHADVGEKAAKSIGGTDVIRFVQHDASDEAGWTKLFDTTEEAFGPVTTVVNNAGIAVSKS--VEDTTTEEWRKLLSVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPTLG-AYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL--EGAEEMMSQRTKTPMGHIGEPNDIAWICVYLASDESKFATGAEFVVDGGYTA------
General information:
TITO was launched using:
RESULT:
Template:
4RF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125129 for 2115 contacts (-59.2/contact) +
2D Compatibility (PS) -26395 + (NN) -8155 + (LL) 1580
1D Compatibility (HY) -15600 + (ID) 4450
Total energy: -178149.0 ( -84.23 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4RF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RF2-query.scw
PDB file :
Tito_Scwrl_4RF2.pdb
: