Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAA--ANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLN-DADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS
2LJA Chain:A ((13-119))
-------------------------------------------FSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDG--------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66902 for 716 contacts (-93.4/contact) +
2D Compatibility (PS) -11471 + (NN) -8887 + (LL) 5872
1D Compatibility (HY) -9200 + (ID) 1350
Total energy: -91938.0 ( -128.41 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_2LJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LJA-query.scw
PDB file :
Tito_Scwrl_2LJA.pdb
: