Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLLDAHIPQLIASHTAFAAKAGLMRHTIGQAEQQAMSAQAFHQGESAAAFQGAHARFVAAAAKVNTLLDIAQANLGEAAGTYVAADAAAASSYTGF
4J42 Chain:A ((8-87))
----KITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQFIPILEGISTDLKRIADKFR-------------
General information:
TITO was launched using:
RESULT:
Template:
4J42.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10359 for 365 contacts (-28.4/contact) +
2D Compatibility (PS) -8905 + (NN) -4475 + (LL) 1368
1D Compatibility (HY) 400 + (ID) 750
Total energy: -22721.0 ( -62.25 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_4J42.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J42-query.scw
PDB file :
Tito_Scwrl_4J42.pdb
: