Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEQEMTEQWLEGCAVQRIMFRDGLVLNFDDYNELVISVPLQLTLPAIETSPAEVVAIDPNDPADHERPLFDFAGATCTAFVWYD-TGDLHLEFSDGHQIDVHPD----------DRVTAWELYGKYHGYAACLAPGKLRVVRHDVADANGDQ
3K8R Chain:A ((24-75))
--------------------------------------------------------------------------EPRAAKARYDRSSARVIVDLENGCTFAFPPRLAQGLEGASDDQLCAVEILGQ---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3K8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16690 for 199 contacts (-83.9/contact) +
2D Compatibility (PS) -4698 + (NN) -2466 + (LL) 6944
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -19610.0 ( -98.54 by residue)
QMean score : 0.187
(partial model without unconserved sides chains):
PDB file :
Tito_3K8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K8R-query.scw
PDB file :
Tito_Scwrl_3K8R.pdb
: