Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVINVP
4M3B Chain:A ((28-92))
--------------------------AILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAV----LLTLLDRVVNQADMAL-------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4M3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35459 for 358 contacts (-99.0/contact) +
2D Compatibility (PS) -6673 + (NN) -3368 + (LL) 10820
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -41780.0 ( -116.70 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4M3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M3B-query.scw
PDB file :
Tito_Scwrl_4M3B.pdb
: