Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGEE
3CTO Chain:C ((1-86))
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREM-----
General information:
TITO was launched using:
RESULT:
Template:
3CTO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17407 for 431 contacts (-40.4/contact) +
2D Compatibility (PS) -9159 + (NN) -1520 + (LL) 8
1D Compatibility (HY) -10000 + (ID) 4300
Total energy: -42378.0 ( -98.32 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_3CTO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CTO-query.scw
PDB file :
Tito_Scwrl_3CTO.pdb
: