Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
4QYI Chain:B ((7-175))
-----------------------------------EIKDTLISEEQLQEKVKELALQIERDFE------GEEIVVIAVLKGSFVFAADLIRHIKNDVTIDFISASSYGNQTETTGKVKLLKDIDVNITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLDKPERRKVDLTAEYVGFQIPDEFIVGYGIDCAEKYRNLPFIASV------
General information:
TITO was launched using:
RESULT:
Template:
4QYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165694 for 1313 contacts (-126.2/contact) +
2D Compatibility (PS) -18143 + (NN) -6196 + (LL) 2912
1D Compatibility (HY) -21200 + (ID) 3600
Total energy: -211921.0 ( -161.40 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4QYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QYI-query.scw
PDB file :
Tito_Scwrl_4QYI.pdb
: