Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKGELRLETRDGAQSTRVLEGEAAGCLMNIIHR-LIAGAEPVEALLFHAGVEGMPVGLGERGEMPDA
1VJ2 Chain:A ((46-123))
-----------------------------------------------PNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVL-KE-QGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE-------------
General information:
TITO was launched using:
RESULT:
Template:
1VJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36889 for 475 contacts (-77.7/contact) +
2D Compatibility (PS) -7837 + (NN) 4730 + (LL) 1992
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -42904.0 ( -90.32 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_1VJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJ2-query.scw
PDB file :
Tito_Scwrl_1VJ2.pdb
: