Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------MTDNPFATPT--APVQPPAREVP---ATTQPYAFIAVLALVTCLSFAVSLGIQWYNDIGEIRQRFSEHLQLMAPHWFTGLVFYAAANLLVL-------------------------------HAYREK----RQLVEFRPLALLLI-----GYGLLNLVCGM-LAGIGLAP-----LTLPFYQWVTAQSSYGVWLMAFNEAMSWVYLLLGSLL---PLGLVLLGSRVNSPRLAEGEEARVAAWQVALGAALCFA---------------TLCFKLMQFLPYALLRYDEPWLYGLY--------LSGVALPAALLFGAVCTRLPARLQRFAAGRALLLAVVAMLLWSVALLAVGGGLALLMILGLAPAGIGYTLLVALLGV----GLLALLWPIGRLATRWCYADQLAA------------------- |
| 5A1F Chain:A ((1-458)) | SMFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLHFTPRIQRLNELEAQTRVRDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIEDEKALRETVRKLGVIDSERM---DFELLPDDERQCVKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYKYKLRYRYTLDDLYPMMNALKLRAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 5A1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -245809 for 2151 contacts (-114.3/contact) +
2D Compatibility (PS) -33405 + (NN) 5916 + (LL) -152
1D Compatibility (HY) -13600 + (ID) 3100
Total energy: -290150.0 ( -134.89 by residue)
QMean score : 0.039
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