Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MTPIEYIDRALA--LVVDRLARYPG-----YEVLLSAE---KQLQYIRSVLLDRSLDRSALHRLTLGSIAVKEFDETDPELSRALKDAYYVGIRTGRGLKVDLP----------
1D5Y Chain:A ((1-119))
QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG
General information:
TITO was launched using:
RESULT:
Template:
1D5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15026 for 575 contacts (-26.1/contact) +
2D Compatibility (PS) -9996 + (NN) -2128 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -29600.0 ( -51.48 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1D5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D5Y-query.scw
PDB file :
Tito_Scwrl_1D5Y.pdb
: