Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLAIPMPERPRRARGRLQLLAIIGLVVGPMLLASAMYKWNFWVPQGRSYSGALIGNGQTPADLGVQGRSQGEQWQLLVTAPGTCGEDCQQLVYLARQINIALGREASRAGHALAAS-GELPADFANL-VRQDYPRLQRYGLDPALY-DKAGGGERPLLWVVDPHGNLVLRYDAKANGKKLLKDVQLLLKLSHIG
2L5O Chain:A ((22-142))
---------------------------------------------------------------------DLQGKVTLINFWFPSCPG-CVSEMPKIIKTANDYKN--KNFQVLAVAQPIDPIES-VRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDAE
General information:
TITO was launched using:
RESULT:
Template:
2L5O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56478 for 860 contacts (-65.7/contact) +
2D Compatibility (PS) -12844 + (NN) -10207 + (LL) 4604
1D Compatibility (HY) -800 + (ID) 600
Total energy: -76325.0 ( -88.75 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2L5O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L5O-query.scw
PDB file :
Tito_Scwrl_2L5O.pdb
: