Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAIYLAGPDVFRPDAEAHGETLKALCAEFGFVGLYPLDHALPADIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDAGAYAERLARLAPEWLGEHPGEDRDGWQLEGFGLPLNLMLAVPSRLVAGGPREALRRLAEELGGNA
1S3F Chain:A ((95-150))
----------------------------------------------------------------------------------DDGSAFEIGFMRAMHKPVI---------------LVP--FTEHPEKEKK----------MNLMIAQGVTTIIDGNTE-FEKLADYNFNEC
General information:
TITO was launched using:
RESULT:
Template:
1S3F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14977 for 281 contacts (-53.3/contact) +
2D Compatibility (PS) -6138 + (NN) -3890 + (LL) 7528
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -23427.0 ( -83.37 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_1S3F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S3F-query.scw
PDB file :
Tito_Scwrl_1S3F.pdb
: