Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR
3N4M Chain:A ((11-209))
------------LEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG--QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR
General information:
TITO was launched using:
RESULT:
Template:
3N4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138130 for 1441 contacts (-95.9/contact) +
2D Compatibility (PS) -21484 + (NN) -4350 + (LL) 1244
1D Compatibility (HY) -24400 + (ID) 6750
Total energy: -193870.0 ( -134.54 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_3N4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N4M-query.scw
PDB file :
Tito_Scwrl_3N4M.pdb
: