Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKILPVPMLAAGLALLPSFAQAE---FFADGKAGLELRNFYFNRDYRQPGASQSYSEEWAQGFLLRYESGYTEGLFGLGVDALGLLGVRLDSSPERSGSGLLPYSTSDRRAAHDYSSLGLTAKLRVSHSTLKIGTLMPRLPVVQFNDTRLHPQTFQGGLLEVNEIDGLALQFGQLRQVKQRDSTNAEDLGITRGNKRNVLAGRHPGSDRFDFAGGTYRWSERLSSSYHYANLEDFYRQHHLGVQHLLPLADDQSLKSDIRWARSTDEGGSR---VNNRALNALFTYRLGGHAFGLGYQRMSGDSGFAYL---AGTDP-YLVNFVQIGDFANKDERSWQLRYDYDFAAIGLPGLTFMSRYLRGEHIDLLDG------------GGRGKEWERDTDIAYLVQSGPLKNLGIKLRNGTFRSDFGN---DIDETRLIVSYALPLW |
| 2ODJ Chain:A ((7-419)) | --------------------QAEAKGFIEDSSLDLLLRNYYFNRDGK-----RV---DWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGT--------------------DYSRAGGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGFQLQSSEFEGLDLEAGHFTE-----------------ELYATYAGETAKS--ADFIGGRYAITDNLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVHGDQPFDYIGFG----SIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMVRYINGKDIDGTKMSDNNVGYKNYGYGEDGKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPLSIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2ODJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1144 for 2641 contacts (-0.4/contact) +
2D Compatibility (PS) -34765 + (NN) 2205 + (LL) 3032
1D Compatibility (HY) -23600 + (ID) 7550
Total energy: -61822.0 ( -23.41 by residue)
QMean score : 0.171
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