Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSKISEYTEKEFLEFVKDIYTNNKKKFPTEESHIQAVLEFKKLTEHPSGSDLLYYPNENREDSPAGVVKEVKEWRASKGLPGFKAG
1EMV Chain:A ((3-85))
LKHSISDYTEAEFLQLVTTICNADTS---SEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ-
General information:
TITO was launched using:
RESULT:
Template:
1EMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6236 for 550 contacts (-11.3/contact) +
2D Compatibility (PS) -9129 + (NN) -8890 + (LL) -116
1D Compatibility (HY) -8000 + (ID) 2100
Total energy: -34471.0 ( -62.67 by residue)
QMean score : 0.783
(partial model without unconserved sides chains):
PDB file :
Tito_1EMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EMV-query.scw
PDB file :
Tito_Scwrl_1EMV.pdb
: