Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSHSPIATVAQALRRAERILVITGAGLSADSGMPTYRGLGGLYNGRTEEGLPIEAALSGPMLRRDPALCWKYLAELGKACLAARPNAGHEAIAE----LQKHKPECWVLTQNIDGFHRQAGSPAERLIEIHGELAPLYCQSCGA-------------------ESGGLEEHLHGQLPPRC--AACGGVLRPPVVLFEEMLPEEAIDTLYRELRKGFDAVLVVGTTA-SFP-YIVEPVLRTRQAGGFTAEVNPGVTDLSERVDVKMTGRALDIMPQVVSHIYR |
| 4UTR Chain:A ((12-271)) | -----DLTAFREHFAKAKHIAIITGAGVSAESGVPTFRGPGGFWRKWQAQDLATPEAFS-----RDPSLVWEFYHYRREVMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGS--KHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGKGAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKC-DLCLVVGTSSIVYPAAMFAPQVASR--GVPVAEFNMECTPATQ--KYHFEGPCGSTLPPALE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UTR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98229 for 1761 contacts (-55.8/contact) +
2D Compatibility (PS) -25321 + (NN) -13492 + (LL) 1460
1D Compatibility (HY) -17600 + (ID) 4300
Total energy: -157482.0 ( -89.43 by residue)
QMean score : 0.456
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