Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAGHVVFSQVSMSHPINLCLAELDRAAIGRLWAPVDAFYMDHLEELIVLDLPGWRDSAGIRREMEFFEA------GGQRVSLWSEVEHEFR
1YDH Chain:A ((100-143))
---------------------------------------------------------------------AAMAQEAEAFIAL--PGG---YGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNN
General information:
TITO was launched using:
RESULT:
Template:
1YDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13831 for 181 contacts (-76.4/contact) +
2D Compatibility (PS) -4316 + (NN) -2382 + (LL) 6380
1D Compatibility (HY) -800 + (ID) 500
Total energy: -15449.0 ( -85.35 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1YDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YDH-query.scw
PDB file :
Tito_Scwrl_1YDH.pdb
: