Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSRIDTPPGFAVYPSASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLLQRFAQPLQGLEADRLELKAMLRAELPLGRQQQT-----FLLQLLGAVEHAPGGEYLAQLARRELQVLIPLNGMLDNLVRNSHKLDLES |
3MDN Chain:A ((101-171)) | ----------------------------------------PFAARRWCFMHNGQVG------------GFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDGQTLY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2716 for 356 contacts (-7.6/contact) +
2D Compatibility (PS) -6332 + (NN) 123 + (LL) 3200
1D Compatibility (HY) 5200 + (ID) 300
Total energy: -825.0 ( -2.32 by residue)
QMean score : 0.100
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