Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMPE
2YJV Chain:C ((2-159))
-KYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLD---
General information:
TITO was launched using:
RESULT:
Template:
2YJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119209 for 1358 contacts (-87.8/contact) +
2D Compatibility (PS) -18152 + (NN) -13666 + (LL) 380
1D Compatibility (HY) -17600 + (ID) 4350
Total energy: -172597.0 ( -127.10 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_2YJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJV-query.scw
PDB file :
Tito_Scwrl_2YJV.pdb
: