Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNILISGAASGIGAASARLFHRRGWRVGLLDIDAEALRGLAAQL-PGAWHRAVDVSEPDAVGEALAQFCAD-GRLRLLFNCAGVLRFGRFEEVALEDHARLLAINLHGVLNCCHAAFPFLRATPQ-AQVLNMGSASGLYGVPEMAVYSASKFAVRGLTEALELEWRRHGIRVADLMPPFVRTPMVAGQAYQPPVLRRLGLRLDAEDIAEAAWRHAHSRRVHRPVGGLFTALYWAGQLSPPWVNRAVMAWLSRG
4E6P Chain:A ((9-188))
-KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNWMS--
General information:
TITO was launched using:
RESULT:
Template:
4E6P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129447 for 1469 contacts (-88.1/contact) +
2D Compatibility (PS) -19096 + (NN) -9568 + (LL) 360
1D Compatibility (HY) -10400 + (ID) 3050
Total energy: -171201.0 ( -116.54 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_4E6P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E6P-query.scw
PDB file :
Tito_Scwrl_4E6P.pdb
: