Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDI--CEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVKA
3OYY Chain:A ((4-189))
MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMDSEFNQYEIEKDDLEGVLTFIEDGM--TDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTS--VMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRV--
General information:
TITO was launched using:
RESULT:
Template:
3OYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87447 for 1198 contacts (-73.0/contact) +
2D Compatibility (PS) -19114 + (NN) 2433 + (LL) 76
1D Compatibility (HY) -24800 + (ID) 9050
Total energy: -137902.0 ( -115.11 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3OYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OYY-query.scw
PDB file :
Tito_Scwrl_3OYY.pdb
: