Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MTLSEPVRRCPRNGKRIAREPGDRPGTFRLIHPRWAGASVKRAVRACSSCVLLCHAHANPEGTHHVQQHPGARQLHHLPVEATEPGHRRRPARRAAGLFRRFLAHRRGTQRRPRYPAQLRLPLPLSREGTRMIKRIAQTAGFAGLLAALLLTLLQILWVTPLILEAETYEKSEPVAAQPHEHAPGVAAHVHDEEAWEPEDGWQRTLSTTGGNLVVAVGFALMLAGLFTLRAPGQTWQGLLW--GLAGYAVFCLAPSLGLPPELPGTA---AADLVQRQYWWIATAAATAVGLALLVFGGNWPLKLVGAVLLALPHLFGAPQPEVHASLAPEALAQRFVVASLVSNALFWAALGLAAAWLFRRNRGGVDA |
| 2HBV Chain:A ((3-333)) | KPRIDMHSHFFPRISEQEAAKFDANHAPWLQVSAKGDTGSIMMGKNNFRPVYQALWD--PAFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAA-HNPQRIKVLAQVPLQDLDLACKEASRAVAA-GHLGIQIGNHLGDKDL-----------DDATLEAFLTHCANEDIPILVHPWDMMGGQRMKKWMLPWLVAMPAETQLAILSLILSGAFE-RIPKSLKICFGHGGGSFAFLLGRVDNAWRHRDIVREDCPRPPSEYVDRFFVDSAVFNPGALELLVSVMG-------EDRVMLGSDYPFPLGEQKIGGLVLSSNLGESAKDKIISGNASKFFNIN---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2HBV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -178009 for 2770 contacts (-64.3/contact) +
2D Compatibility (PS) -33681 + (NN) -5736 + (LL) 3292
1D Compatibility (HY) -1200 + (ID) 1950
Total energy: -217284.0 ( -78.44 by residue)
QMean score : 0.201
|
|
|