Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
4HDC Chain:A ((4-205))
----FITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPGGVPTGEEIRKIVLEGND--MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII--------DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI--
General information:
TITO was launched using:
RESULT:
Template:
4HDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73940 for 1542 contacts (-48.0/contact) +
2D Compatibility (PS) -22180 + (NN) -17878 + (LL) 584
1D Compatibility (HY) -13600 + (ID) 3750
Total energy: -130764.0 ( -84.80 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4HDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HDC-query.scw
PDB file :
Tito_Scwrl_4HDC.pdb
: