Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLSLYLLTVLIWGTTWIAIKLQMGPVAITLSIAYRFALAALVLFAVLLLGRRLQRLDARGQRLCMAQGVCLFCLNFICFYTASQWIPSGLVAVVFSTATLWNALNARLWFGQRIASNVMAGGGLGLLGLGLLFWPELVGHQATPETFYGLGLALLGTLCFSTGNMLSSLQQKAGIRPLTGNAWSMLYGTLILLALCLFQGVPLSFDWSARYVGSLLYLAIPGSVIGFTAYLTLVGRMGPDRAAYCTVLFPVVALNISAFAEGYRWTAPALAGL-----VLVMLGN---VLVFRKPKAPALAGPARST |
| 2JDQ Chain:D ((688-756)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSQTATKRIRM |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2JDQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -41575 for 264 contacts (-157.5/contact) +
2D Compatibility (PS) -5776 + (NN) -1167 + (LL) 19704
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -32214.0 ( -122.02 by residue)
QMean score : 0.248
|
|
|