Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRMPLATASLLALAISLAGCGDDKKAEAPATPAASTQPAAPAAAPAAKVDEAAAKAVIKNYADLAEATFADALSTAKDLQKAIDAFLAKPDAETLKAAKEAWFAARTPYSQSEAFRFGNAIIDDWEGQVNAWPLDEGLIDYVAKDYQHALGNPGATANIVANTEIQVGEDKIDVKEITGEKLASLNELGGSEANVATGYHAIEFLLWGQDLNGTGPGAGNRPATDYAQGKDCTGGHCDRRAAYLKAVTDLLVSDLEYMAGQWKAGVA--DNYRAKLEAEP------VDTGLRKMFFGMGSLSLGELAGERMKVALEA-------NSTEDEHDCFSDDTHHTLFFNGKSIRNIYLGEYKRIDGSVVKGPSLADLVAKADAAANDTLKADLADTEAKLQAIVDSAEKDGVHFDQMIAPDNKDGQQKIRDAIAALVKQTGAIE-QAAGKLGIQDLKPDNADHEF |
| 3OYV Chain:A ((20-218)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAHSGSPYASALSCVEEIVDKCAE-IANEVGTAKIGDPYNLYKAGNTEEALYAVESWYSWHSRDDYTNNIYSIRNAYYGSLDGN----INANSLSTVIAGANSSLDTKIKNAIQKAAKAIQDIP-------QPFRNHIPSN------ETVAAMDACAELESILKNDLKSYIANNSN--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OYV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -36488 for 1275 contacts (-28.6/contact) +
2D Compatibility (PS) -19841 + (NN) -12097 + (LL) 14344
1D Compatibility (HY) -7600 + (ID) 1400
Total energy: -63082.0 ( -49.48 by residue)
QMean score : 0.362
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