Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAKDLEKAQAAFTAAVPVIDRMADKGIIHKNKAARHKSRLSGHIKALSTAAA
2UXD Chain:T ((11-96))
-----SALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAG
General information:
TITO was launched using:
RESULT:
Template:
2UXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22302 for 557 contacts (-40.0/contact) +
2D Compatibility (PS) -9190 + (NN) -3529 + (LL) 184
1D Compatibility (HY) -400 + (ID) 1600
Total energy: -36837.0 ( -66.13 by residue)
QMean score : 0.698
(partial model without unconserved sides chains):
PDB file :
Tito_2UXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UXD-query.scw
PDB file :
Tito_Scwrl_2UXD.pdb
: