Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA
4LWQ Chain:A ((4-194))
MSNISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIG--PNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQINAYK-
General information:
TITO was launched using:
RESULT:
Template:
4LWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107185 for 1628 contacts (-65.8/contact) +
2D Compatibility (PS) -20325 + (NN) -8375 + (LL) 184
1D Compatibility (HY) -18400 + (ID) 5600
Total energy: -159701.0 ( -98.10 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_4LWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWQ-query.scw
PDB file :
Tito_Scwrl_4LWQ.pdb
: