Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIRRKTAVPRNAGAVLPMLACLAAQAAEGGFLEDAKTDLVLRNYYFNRDFRDHDAGKSLVDEWAQGFILKFSSGYTPGTVGVGLDAIGLFGVKLNSGRGTSNSELLPLHDDGRAADNYGRVGVAAKLRVSASELKIGEMLPDIPLLRYDDGRLLPQTFRGFAVVSRELPGLALQAGRF--DAVSLRNSADMQDLSAWSAPTQKSDGFNYAGAEYRFNRERTQLGLWHGQLEDVYRQSYANLLHKQRVG-DWTLGANLGLFVDRDDGAARAGEIDSHTVYGLFSA-GIGLHTFYLGLQKVGGDSGWQSV-YGSSGRSMGND-MFNGN------FTNADERSWQVRYDYDFVGLGWPGLIGMVRYGHGSNAT-TKA------------GSGGKEWERDVELGYTVQSGPLARLNVRLN---HASNRRSFNSDFDQTRLVVSYPLSW |
| 2ODJ Chain:A ((4-418)) | ----------------------VSDQAEAKGFIEDSSLDLLLRNYYFNRDGK--------RVDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGT-------------------DYSRAGGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGFQLQSSEFEGLDLEAGHFTE---------EL--YATYAGETAKSADF--IGGRYAIT-DNLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDI-SNTTWSLAAAYTLDAHTFTLAYQKVHGDQPFDYIGFG---------SIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMVRYINGKDIDGTKMSDNNVGYKNYGYGEDGKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPLS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2ODJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7428 for 2603 contacts (-2.9/contact) +
2D Compatibility (PS) -35121 + (NN) -773 + (LL) 2884
1D Compatibility (HY) -25200 + (ID) 7300
Total energy: -72938.0 ( -28.02 by residue)
QMean score : 0.169
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