Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPVVLITGAAGGLGRAIAKRFAQSHWRIAATDVDKEGLHALNAQV---PLDASG-VADLRSADNCHTLMSKILARTGRLDALVNAAGVWREGPVENFTEEDFDLVLGVNLKASFYMCQAAIP---YLKENQGSIVNISSDSGRQAYRGSAAYCASKAALTMLSKTLALELAEQGVRVNAVSPADIATPMLDYQAERYG----MGNPDGYKRALLKDYPQGKAARFIRPEEVAELVWYLCGPQAEAITGADLAVDFGLSAGR
2RHC Chain:B ((24-274))
----VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDR-ITARVPIG---RYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL----
General information:
TITO was launched using:
RESULT:
Template:
2RHC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144824 for 2085 contacts (-69.5/contact) +
2D Compatibility (PS) -25982 + (NN) -11643 + (LL) 632
1D Compatibility (HY) -17600 + (ID) 4300
Total energy: -203717.0 ( -97.71 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_2RHC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RHC-query.scw
PDB file :
Tito_Scwrl_2RHC.pdb
: